Outcome: Foundational Python programming, biological data analysis, visualization, sequence analysis, and introductory bioinformatics proficiency. PHASE 1: Foundations of Python Programming & Biological Data Handling (Days 1–15) Theme: Building basic computational and problem-solving skills for biological research using Python. Learning Objectives: • Develop familiarity with Python programming environments such as Google Colab and Jupyter Notebook. • Learn variables, data types, operators, strings, lists, tuples, dictionaries, conditional statements, loops, and functions. • Understand file handling and basic manipulation of biological datasets. • Apply Python programming to simple DNA, RNA, and protein sequence-based problems. Outcome: Participants will develop foundational Python programming skills and independently perform basic biological data handling, sequence manipulation, and computational analysis. PHASE 2: Biological Data Analysis, Visualization & Bioinformatics Applications (Days 16–30) Theme: Applying Python libraries for biological data analysis, scientific visualization, and introductory bioinformatics workflows. Learning Objectives: • Perform data cleaning, filtering, transformation, and analysis using NumPy and Pandas. • Create scientific visualizations using Matplotlib. • Analyze DNA and protein sequences using Biopython. • Import, process, and interpret FASTA and related biological data files. • Integrate computational analysis with scientific reporting and mini review article preparation. Outcome: Participants will analyze biological datasets, generate scientific visualizations, perform introductory sequence analysis using Python, and prepare a research-oriented mini review article.
Course Details
Explore the comprehensive course modules
Introduction to Python programming environment and notebook interface for biological data analysis, coding, visualization, and computational research workflows.
Installation/setup of Python tools and execution of basic commands for understanding the Python programming workflow.
Writing first Python code using print(), strings, comments, and biology-themed text examples.
Hands-on practice with print statements, strings, comments, and simple message-based programs.
Understanding variables and basic data types for storing biological and experimental information.
Create variables for genes, sequences, sample IDs, expression values, and experiment labels.
Basic arithmetic, comparison operators, and biological calculations using Python.
Perform GC percentage, concentration, dilution, and simple lab data calculations.
Using ordered collections to store genes, samples, nucleotide bases, and biological observations.
Create and manipulate lists/tuples for DNA bases, sample names, and experimental values.
Using key–value pairs and unique collections for biological annotation and metadata management.
Build dictionaries for gene annotations, species data, and experimental sample information.
Using conditions and loops to automate repetitive biological data tasks.
Apply loops and conditions for DNA sequence counting, validation, and simple analysis.
Assessment of Python basics, variables, collections, control flow, biological calculations, and mini coding task submission.
Writing reusable functions for biological computations and sequence-based analysis.
Develop Python functions for GC content, sequence length, and nucleotide composition.
Reading and writing TXT, CSV, and simple biological data files using Python.
Hands-on practice importing, processing, and exporting biological datasets.
Using NumPy arrays for numerical computing and matrix-based biological data analysis.
Analyze gene expression-style matrices and numerical biological datasets using NumPy.
DataFrame-based biological data cleaning, filtering, sorting, and summarization.
Analyze biological sample datasets using Pandas for filtering, grouping, and interpretation.
Create basic scientific plots such as line plots, bar plots, and scatter plots.
Generate and interpret plots for biological and experimental datasets using Matplotlib.
Introduction to Biopython for DNA/protein sequence handling and FASTA file analysis.
Import, analyze, and interpret FASTA sequence datasets using Biopython tools.
Combine Python, Pandas, visualization, and Biopython for small biological analysis workflows.
Scientific review writing involving literature survey, biological data interpretation, visualization integration, and Python-based analysis summary.
Final evaluation
Learn from leading experts in stem cell research
Dr. Awadhesh Kumar Verma is an interdisciplinary academician and computational biology trainer with expertise in Python, R, Biopython, bioinformatics, artificial intelligence, machine learning, molecular modelling, and biological data analysis. He currently serves as an Assistant Professor in the School of Bioengineering and Biosciences, Lovely Professional University. His work focuses on applying programming and computational tools to biological and biomedical research, including genomic data analysis, sequence analysis, biomarker discovery, molecular docking, data visualization, and automation of research workflows. He is especially committed to helping biology students, wet-lab researchers, and early-career scientists develop practical coding skills from the beginner level. Through application-based teaching, Dr. Verma enables learners to use Python for biological data handling, visualization, sequence processing, statistical analysis, and reproducible computational research. His interdisciplinary approach connects biological concepts with programming, helping participants understand how computational methods can be used to solve real research problems.