PYTHON FOR BIOLOGISTS (LEVEL I)

Course Description

Outcome: Foundational Python programming, biological data analysis, visualization, sequence analysis, and introductory bioinformatics proficiency. PHASE 1: Foundations of Python Programming & Biological Data Handling (Days 1–15) Theme: Building basic computational and problem-solving skills for biological research using Python. Learning Objectives: • Develop familiarity with Python programming environments such as Google Colab and Jupyter Notebook. • Learn variables, data types, operators, strings, lists, tuples, dictionaries, conditional statements, loops, and functions. • Understand file handling and basic manipulation of biological datasets. • Apply Python programming to simple DNA, RNA, and protein sequence-based problems. Outcome: Participants will develop foundational Python programming skills and independently perform basic biological data handling, sequence manipulation, and computational analysis. PHASE 2: Biological Data Analysis, Visualization & Bioinformatics Applications (Days 16–30) Theme: Applying Python libraries for biological data analysis, scientific visualization, and introductory bioinformatics workflows. Learning Objectives: • Perform data cleaning, filtering, transformation, and analysis using NumPy and Pandas. • Create scientific visualizations using Matplotlib. • Analyze DNA and protein sequences using Biopython. • Import, process, and interpret FASTA and related biological data files. • Integrate computational analysis with scientific reporting and mini review article preparation. Outcome: Participants will analyze biological datasets, generate scientific visualizations, perform introductory sequence analysis using Python, and prepare a research-oriented mini review article.

Course Fee Seats Limited

₹1000.00

Course Details

Duration
Duration
30 HRS
Duration
Course Label
SkillDevelopment
Certificate
Certificate
Yes
Course Language
English
Duration
Course Mode
Online
Duration
Timings
7 PM - 8 PM
Days
Monday to Friday
Registration Till
10 Aug 2026
Duration
Tentative ClassStart Date
4th Week of August
Duration
Eligible Schools:
Certificate Criteria
Certificate Criteria
75% attendance, 50% score in all Exams/CA

Curriculum Snapshot

Explore the comprehensive course modules

1 Introduction to Python Google Colab/Jupyter

Introduction to Python programming environment and notebook interface for biological data analysis, coding, visualization, and computational research workflows.

2 Assignment Practice: Python Setup Basic Commands Basic Commands

Installation/setup of Python tools and execution of basic commands for understanding the Python programming workflow.

3 Printing, Strings Comments

Writing first Python code using print(), strings, comments, and biology-themed text examples.

4 Assignment Practice: First Python Code Practice

Hands-on practice with print statements, strings, comments, and simple message-based programs.

5 Variables Data Types

Understanding variables and basic data types for storing biological and experimental information.

6 Assignment Practice: Variables for Biological Data

Create variables for genes, sequences, sample IDs, expression values, and experiment labels.

7 Numbers, Operators Calculations

Basic arithmetic, comparison operators, and biological calculations using Python.

8 Assignment Practice: Biological Calculations

Perform GC percentage, concentration, dilution, and simple lab data calculations.

9 Lists Tuples

Using ordered collections to store genes, samples, nucleotide bases, and biological observations.

10 Assignment Practice: Sequence List Practice

Create and manipulate lists/tuples for DNA bases, sample names, and experimental values.

11 Dictionaries Sets

Using key–value pairs and unique collections for biological annotation and metadata management.

12 Assignment Practice: Biological Metadata Construction

Build dictionaries for gene annotations, species data, and experimental sample information.

13 Control Flow: if-else Loops

Using conditions and loops to automate repetitive biological data tasks.

14 Assignment Practice: DNA Sequence Logic

Apply loops and conditions for DNA sequence counting, validation, and simple analysis.

15 Evaluation 1 (CA1)

Assessment of Python basics, variables, collections, control flow, biological calculations, and mini coding task submission.

16 Functions in Python

Writing reusable functions for biological computations and sequence-based analysis.

17 Assignment Practice: Function-Based GC Calculator

Develop Python functions for GC content, sequence length, and nucleotide composition.

18 File Handling in Python

Reading and writing TXT, CSV, and simple biological data files using Python.

19 Assignment Practice: Biological File Import/Export

Hands-on practice importing, processing, and exporting biological datasets.

20 Introduction to NumPy

Using NumPy arrays for numerical computing and matrix-based biological data analysis.

21 Assignment Practice: NumPy Matrix Operations

Analyze gene expression-style matrices and numerical biological datasets using NumPy.

22 Introduction to Pandas

DataFrame-based biological data cleaning, filtering, sorting, and summarization.

23 Assignment Practice: Pandas Dataset Analysis

Analyze biological sample datasets using Pandas for filtering, grouping, and interpretation.

24 Data Visualization with Matplotlib

Create basic scientific plots such as line plots, bar plots, and scatter plots.

25 Assignment Practice: Plotting Biological Data

Generate and interpret plots for biological and experimental datasets using Matplotlib.

26 Introduction to Biopython

Introduction to Biopython for DNA/protein sequence handling and FASTA file analysis.

27 Assignment Practice: FASTA Analysis with Biopython

Import, analyze, and interpret FASTA sequence datasets using Biopython tools.

28 Basic Bioinformatics Workflow in Python

Combine Python, Pandas, visualization, and Biopython for small biological analysis workflows.

29 Mini Review Article Preparation

Scientific review writing involving literature survey, biological data interpretation, visualization integration, and Python-based analysis summary.

30 Evaluation (CA2)

Final evaluation

Instructor Spotlight

Learn from leading experts in stem cell research

Dr. Awadhesh Kumar Verma

Dr. Awadhesh Kumar Verma

Assistant Professor

Dr. Awadhesh Kumar Verma is an interdisciplinary academician and computational biology trainer with expertise in Python, R, Biopython, bioinformatics, artificial intelligence, machine learning, molecular modelling, and biological data analysis. He currently serves as an Assistant Professor in the School of Bioengineering and Biosciences, Lovely Professional University. His work focuses on applying programming and computational tools to biological and biomedical research, including genomic data analysis, sequence analysis, biomarker discovery, molecular docking, data visualization, and automation of research workflows. He is especially committed to helping biology students, wet-lab researchers, and early-career scientists develop practical coding skills from the beginner level. Through application-based teaching, Dr. Verma enables learners to use Python for biological data handling, visualization, sequence processing, statistical analysis, and reproducible computational research. His interdisciplinary approach connects biological concepts with programming, helping participants understand how computational methods can be used to solve real research problems.